STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AQX54087.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (92 aa)    
Predicted Functional Partners:
infB
Translation initiation factor IF-2; One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. IF-2 subfamily.
  
  
 0.900
rbfA
Ribosome-binding factor A; One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Required for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA.
  
  
 0.822
AQX56413.1
50S ribosomal protein L7; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.797
nusA
Transcription termination/antitermination protein NusA; Participates in both transcription termination and antitermination.
  
    0.760
AQX54085.1
RNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.759
polC
PolC-type DNA polymerase III; Required for maturation of 30S ribosomal subunits. Belongs to the RimP family.
     
 0.642
AQX53375.1
Na+/H+ antiporter subunit G; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
    0.574
AQX53138.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.566
AQX55338.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.546
AQX53665.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.497
Your Current Organism:
Bacillus flexus
NCBI taxonomy Id: 86664
Other names: ATCC 49095, B. flexus, Bacillus sp. Fu, Bacillus sp. OS46R, Bacillus sp. PRD 213, CCUG 28525, CIP 106928, HAMBI 2080, IFO 15715, JCM 12301, LMG 11155, LMG:11155, NBRC 15715, NRRL NRS-665
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.