Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
AQX54556.1Multidrug transporter MatE; Derived by automated computational analysis using gene prediction method: Protein Homology. (443 aa)    
Predicted Functional Partners:
yqfD
Sporulation protein YqfD; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.635
AQX53168.1
Acetyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.607
yabP
Sporulation protein YabP; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.604
sirA
Sporulation inhibitor of replication protein sirA; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.590
spoVID
Glutamate-1-semialdehyde-2,1-aminomutase; Frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.579
AQX56182.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.562
ysxE
Spore coat protein YsxE; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.538
yabQ
Spore cortex biosynthesis protein YabQ; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.519
ylbJ
Sporulation integral membrane protein YlbJ; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.501
spoIIIAE
Stage III sporulation protein AE; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.498
Your Current Organism:
Bacillus flexus
NCBI taxonomy Id: 86664
Other names: ATCC 49095, B. flexus, Bacillus sp. Fu, Bacillus sp. OS46R, Bacillus sp. PRD 213, CCUG 28525, CIP 106928, HAMBI 2080, IFO 15715, JCM 12301, LMG 11155, LMG:11155, NBRC 15715, NRRL NRS-665
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