STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDI92543.1Type IV pilus assembly protein PilC. (401 aa)    
Predicted Functional Partners:
SDI92502.1
Type IV pilus assembly protein PilB.
 
 0.990
SDI95735.1
Competence-related pilin export protein ComGA.
 
 0.961
SDI92523.1
Twitching motility protein PilT.
  
 0.956
SDI92556.1
Type IV pilus assembly protein PilA.
 
  
 0.930
SDI92575.1
Type 4 prepilin peptidase 1 Aspartic peptidase. MEROPS family A24A.
 
  
 0.918
SDI92417.1
Prepilin-type N-terminal cleavage/methylation domain-containing protein.
  
  
 0.892
SDI92592.1
Type IV pilus assembly protein PilM.
 
 
 
 0.886
SDI92406.1
Prepilin-type N-terminal cleavage/methylation domain-containing protein.
  
  
 0.850
SDI95689.1
Competence protein ComGC; Required for transformation and DNA binding.
  
  
 0.786
SDI95620.1
Competence protein ComGF.
  
  
 0.769
Your Current Organism:
Salimicrobium halophilum
NCBI taxonomy Id: 86666
Other names: ATCC 49085, Bacillus halophilus, CCM 4074, DSM 4771, HAMBI 2106, JCM 12305, LMG 17942, LMG:17942, NBRC 102426, S. halophilum, strain N23-2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.