STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDJ04452.1Uncharacterized membrane protein YgaE, UPF0421/DUF939 family. (356 aa)    
Predicted Functional Partners:
SDJ04480.1
Glycine betaine transporter; Belongs to the BCCT transporter (TC 2.A.15) family.
       0.718
SDJ43097.1
Putative zincin peptidase.
  
     0.669
SDJ04439.1
Peptidoglycan/xylan/chitin deacetylase, PgdA/CDA1 family.
 
     0.663
SDJ68411.1
Inner membrane protein.
  
     0.573
SDJ43069.1
Hypothetical protein.
  
     0.566
SDJ61034.1
DUF4097 and DUF4098 domain-containing protein YvlB.
  
     0.520
SDJ34674.1
Uncharacterized protein YoxC, contains an MCP-like domain.
  
     0.502
SDJ18363.1
YwpF-like protein.
  
     0.498
SDJ65121.1
Hypothetical protein.
  
     0.469
SDJ49912.1
Voltage-gated potassium channel.
  
     0.420
Your Current Organism:
Salimicrobium halophilum
NCBI taxonomy Id: 86666
Other names: ATCC 49085, Bacillus halophilus, CCM 4074, DSM 4771, HAMBI 2106, JCM 12305, LMG 17942, LMG:17942, NBRC 102426, S. halophilum, strain N23-2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.