STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDJ24968.1Hypothetical protein. (360 aa)    
Predicted Functional Partners:
SDJ24947.1
Glycosyltransferase, catalytic subunit of cellulose synthase and poly-beta-1,6-N-acetylglucosamine synthase.
 
 
 0.976
SDJ24926.1
Uncharacterized protein YdaL.
 
    0.958
SDJ11796.1
Outer membrane protein assembly factor BamB, contains PQQ-like beta-propeller repeat.
  
     0.588
SDJ24908.1
Hypothetical protein.
       0.540
SDJ24986.1
PAS domain S-box-containing protein/diguanylate cyclase (GGDEF) domain-containing protein.
  
    0.522
SDI98318.1
Tetratricopeptide repeat-containing protein.
  
  
 0.507
SDJ60631.1
UDP-glucose pyrophosphorylase.
    
  0.490
SDJ12963.1
Beta-glucosidase.
     
 0.477
SDJ53455.1
beta-N-acetylhexosaminidase.
     
 0.477
SDJ62712.1
Uncharacterized membrane protein.
 
   
 0.450
Your Current Organism:
Salimicrobium halophilum
NCBI taxonomy Id: 86666
Other names: ATCC 49085, Bacillus halophilus, CCM 4074, DSM 4771, HAMBI 2106, JCM 12305, LMG 17942, LMG:17942, NBRC 102426, S. halophilum, strain N23-2
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