STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDJ26187.1Enamine deaminase RidA, house cleaning of reactive enamine intermediates, YjgF/YER057c/UK114 family. (152 aa)    
Predicted Functional Partners:
SDJ66369.1
3-deoxy-D-arabinoheptulosonate-7-phosphate synthase /chorismate mutase.
    
  0.875
SDJ33744.1
Para-aminobenzoate synthetase / 4-amino-4-deoxychorismate lyase.
    
 0.805
SDJ26174.1
Glyoxylase, beta-lactamase superfamily II.
  
    0.780
SDJ26153.1
Uncharacterized protein, contains SIS (Sugar ISomerase) phosphosugar binding domain; Belongs to the UPF0309 family.
       0.768
SDJ26214.1
Predicted dehydrogenase.
       0.746
SDJ26224.1
Carbohydrate ABC transporter membrane protein 2, CUT1 family.
       0.726
xylB-2
Xylulokinase.
  
    0.705
fusA
Translation elongation factor 2 (EF-2/EF-G); Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post-translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. [...]
    
  0.694
SDJ26250.1
Carbohydrate ABC transporter membrane protein 1, CUT1 family.
       0.687
SDJ26337.1
Sugar phosphate isomerase/epimerase.
 
  
  0.596
Your Current Organism:
Salimicrobium halophilum
NCBI taxonomy Id: 86666
Other names: ATCC 49085, Bacillus halophilus, CCM 4074, DSM 4771, HAMBI 2106, JCM 12305, LMG 17942, LMG:17942, NBRC 102426, S. halophilum, strain N23-2
Server load: low (14%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.