STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDJ36027.1Catechol 2,3-dioxygenase. (122 aa)    
Predicted Functional Partners:
icmF
methylmalonyl-CoA mutase; Catalyzes the reversible interconversion of isobutyryl-CoA and n-butyryl-CoA, using radical chemistry. Also exhibits GTPase activity, associated with its G-protein domain (MeaI) that functions as a chaperone that assists cofactor delivery and proper holo-enzyme assembly.
    
 0.842
SDJ36048.1
Peptide/nickel transport system permease protein.
 
     0.809
SDJ36074.1
Binding-protein-dependent transport system inner membrane component.
       0.760
SDJ36008.1
Small multidrug resistance family-3 protein.
       0.543
SDJ34287.1
Glyoxylase, beta-lactamase superfamily II.
  
  
 0.541
SDJ35986.1
Voltage-gated potassium channel.
       0.530
SDJ35962.1
HNH endonuclease.
       0.498
SDJ36094.1
2,4-dienoyl-CoA reductase.
       0.484
SDJ34116.1
Hydroxyacylglutathione hydrolase.
     
 0.473
SDJ64693.1
Succinate dehydrogenase subunit C.
   
    0.447
Your Current Organism:
Salimicrobium halophilum
NCBI taxonomy Id: 86666
Other names: ATCC 49085, Bacillus halophilus, CCM 4074, DSM 4771, HAMBI 2106, JCM 12305, LMG 17942, LMG:17942, NBRC 102426, S. halophilum, strain N23-2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.