STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDJ50093.1Gluconate 5-dehydrogenase. (259 aa)    
Predicted Functional Partners:
SDJ42559.1
Glutamate synthase (NADH) large subunit.
     
 0.908
SDJ50112.1
acyl-CoA dehydrogenase.
  0.838
SDJ50030.1
Predicted kinase, aminoglycoside phosphotransferase (APT) family.
   0.836
SDJ46749.1
PTS system beta-glucoside-specific IIA component, Glc family /PTS system beta-glucoside-specific IIB component, Glc family /PTS system beta-glucoside-specific IIC component, Glc family.
     
 0.812
SDJ81543.1
PTS system D-glucose-specific IIA component, Glc family /PTS system D-glucose-specific IIB component, Glc family /PTS system D-glucose-specific IIC component, Glc family.
     
 0.812
SDJ50053.1
acyl-CoA thioester hydrolase.
   
  0.803
SDJ50011.1
NADPH2:quinone reductase.
 
  0.784
SDJ50071.1
DNA-binding transcriptional regulator, AcrR family.
 
     0.770
SDJ65540.1
Pyruvate kinase; Belongs to the pyruvate kinase family.
   
 0.703
SDJ02594.1
[Acyl-carrier-protein] S-malonyltransferase.
 0.652
Your Current Organism:
Salimicrobium halophilum
NCBI taxonomy Id: 86666
Other names: ATCC 49085, Bacillus halophilus, CCM 4074, DSM 4771, HAMBI 2106, JCM 12305, LMG 17942, LMG:17942, NBRC 102426, S. halophilum, strain N23-2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.