STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDJ58414.1Predicted O-methyltransferase YrrM. (212 aa)    
Predicted Functional Partners:
SDJ79262.1
NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family.
 
  
   0.772
SDJ17299.1
NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family.
 
  
   0.742
SDJ02580.1
3-oxoacyl-[acyl-carrier-protein] reductase; Catalyzes the NADPH-dependent reduction of beta-ketoacyl-ACP substrates to beta-hydroxyacyl-ACP products, the first reductive step in the elongation cycle of fatty acid biosynthesis. Belongs to the short-chain dehydrogenases/reductases (SDR) family.
 
  
   0.737
SDJ58311.1
Glucose 1-dehydrogenase.
 
  
   0.701
SDJ80344.1
NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family.
 
  
   0.695
SDJ37007.1
NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family.
 
  
   0.694
SDJ35009.1
NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family.
 
  
   0.669
SDJ33553.1
UPF0176 protein; Belongs to the UPF0176 family.
 
    
 0.643
SDJ58334.1
NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family.
 
  
   0.587
SDJ57434.1
3alpha(or 20beta)-hydroxysteroid dehydrogenase.
 
  
   0.551
Your Current Organism:
Salimicrobium halophilum
NCBI taxonomy Id: 86666
Other names: ATCC 49085, Bacillus halophilus, CCM 4074, DSM 4771, HAMBI 2106, JCM 12305, LMG 17942, LMG:17942, NBRC 102426, S. halophilum, strain N23-2
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