STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDJ68959.1Diguanylate cyclase (GGDEF) domain-containing protein. (699 aa)    
Predicted Functional Partners:
SDJ01672.1
Flagellar motor switch protein FliN/FliY.
  
 
 0.993
SDJ45425.1
Two-component system, chemotaxis family, CheB/CheR fusion protein.
 
 0.991
SDJ49474.1
Two-component system, sporulation sensor kinase A.
 
 0.979
SDJ80044.1
Transcriptional regulator, contains XRE-family HTH domain.
  
 0.956
SDJ80302.1
PAS domain S-box-containing protein.
 
 0.955
SDJ18636.1
Two-component system, chemotaxis family, response regulator CheV.
  
 0.943
SDJ58046.1
GAF domain-containing protein.
 0.942
SDJ36551.1
Serine phosphatase RsbU, regulator of sigma subunit.
 
 
 0.935
SDJ34047.1
Methyl-accepting chemotaxis sensory transducer with Cache sensor.
 
 0.924
SDJ80578.1
Diguanylate cyclase (GGDEF) domain-containing protein.
 
 
0.924
Your Current Organism:
Salimicrobium halophilum
NCBI taxonomy Id: 86666
Other names: ATCC 49085, Bacillus halophilus, CCM 4074, DSM 4771, HAMBI 2106, JCM 12305, LMG 17942, LMG:17942, NBRC 102426, S. halophilum, strain N23-2
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