Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| EFL45006.1 | EFL45862.1 | HMPREF9296_0194 | HMPREF9296_0098 | acyl-CoA dehydrogenase, C-terminal domain protein; Identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF08028. | Hypothetical protein. | 0.611 |
| EFL45006.1 | etfA | HMPREF9296_0194 | HMPREF9296_0195 | acyl-CoA dehydrogenase, C-terminal domain protein; Identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF08028. | Electron transfer flavoprotein FAD-binding domain protein; Identified by match to protein family HMM PF00766; match to protein family HMM PF01012. | 0.997 |
| EFL45006.1 | fabG | HMPREF9296_0194 | HMPREF9296_1658 | acyl-CoA dehydrogenase, C-terminal domain protein; Identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF08028. | 3-oxoacyl-[acyl-carrier-protein] reductase; Catalyzes the NADPH-dependent reduction of beta-ketoacyl-ACP substrates to beta-hydroxyacyl-ACP products, the first reductive step in the elongation cycle of fatty acid biosynthesis. Belongs to the short-chain dehydrogenases/reductases (SDR) family. | 0.614 |
| EFL45006.1 | menB | HMPREF9296_0194 | HMPREF9296_0100 | acyl-CoA dehydrogenase, C-terminal domain protein; Identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF08028. | Naphthoate synthase; Converts o-succinylbenzoyl-CoA (OSB-CoA) to 1,4-dihydroxy-2- naphthoyl-CoA (DHNA-CoA). | 0.453 |
| EFL45006.1 | ribD | HMPREF9296_0194 | HMPREF9296_0710 | acyl-CoA dehydrogenase, C-terminal domain protein; Identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF08028. | Riboflavin biosynthesis protein RibD; Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'- phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)-pyrimidinedione 5'- phosphate; In the C-terminal section; belongs to the HTP reductase family. | 0.655 |
| EFL45677.1 | EFL45855.1 | HMPREF9296_1611 | HMPREF9296_0103 | Hypothetical protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; overlaps another CDS with the same product name. | Identified by match to protein family HMM PF03061; match to protein family HMM TIGR00369. | 0.693 |
| EFL45677.1 | EFL45858.1 | HMPREF9296_1611 | HMPREF9296_0102 | Hypothetical protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; overlaps another CDS with the same product name. | Isochorismate synthase; Identified by match to protein family HMM PF00425; match to protein family HMM TIGR00543. | 0.522 |
| EFL45677.1 | EFL45862.1 | HMPREF9296_1611 | HMPREF9296_0098 | Hypothetical protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; overlaps another CDS with the same product name. | Hypothetical protein. | 0.646 |
| EFL45677.1 | menB | HMPREF9296_1611 | HMPREF9296_0100 | Hypothetical protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; overlaps another CDS with the same product name. | Naphthoate synthase; Converts o-succinylbenzoyl-CoA (OSB-CoA) to 1,4-dihydroxy-2- naphthoyl-CoA (DHNA-CoA). | 0.769 |
| EFL45677.1 | menD | HMPREF9296_1611 | HMPREF9296_0101 | Hypothetical protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; overlaps another CDS with the same product name. | 2-succinyl-5-enolpyruvyl-6-hydroxy-3- cyclohexene-1-carboxylic-acid synthase; Catalyzes the thiamine diphosphate-dependent decarboxylation of 2-oxoglutarate and the subsequent addition of the resulting succinic semialdehyde-thiamine pyrophosphate anion to isochorismate to yield 2- succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate (SEPHCHC). Belongs to the TPP enzyme family. MenD subfamily. | 0.782 |
| EFL45855.1 | EFL45677.1 | HMPREF9296_0103 | HMPREF9296_1611 | Identified by match to protein family HMM PF03061; match to protein family HMM TIGR00369. | Hypothetical protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; overlaps another CDS with the same product name. | 0.693 |
| EFL45855.1 | EFL45858.1 | HMPREF9296_0103 | HMPREF9296_0102 | Identified by match to protein family HMM PF03061; match to protein family HMM TIGR00369. | Isochorismate synthase; Identified by match to protein family HMM PF00425; match to protein family HMM TIGR00543. | 0.865 |
| EFL45855.1 | EFL45862.1 | HMPREF9296_0103 | HMPREF9296_0098 | Identified by match to protein family HMM PF03061; match to protein family HMM TIGR00369. | Hypothetical protein. | 0.770 |
| EFL45855.1 | menB | HMPREF9296_0103 | HMPREF9296_0100 | Identified by match to protein family HMM PF03061; match to protein family HMM TIGR00369. | Naphthoate synthase; Converts o-succinylbenzoyl-CoA (OSB-CoA) to 1,4-dihydroxy-2- naphthoyl-CoA (DHNA-CoA). | 0.944 |
| EFL45855.1 | menC | HMPREF9296_0103 | HMPREF9296_0099 | Identified by match to protein family HMM PF03061; match to protein family HMM TIGR00369. | O-succinylbenzoate synthase; Identified by match to protein family HMM PF01188; match to protein family HMM TIGR01927. | 0.587 |
| EFL45855.1 | menD | HMPREF9296_0103 | HMPREF9296_0101 | Identified by match to protein family HMM PF03061; match to protein family HMM TIGR00369. | 2-succinyl-5-enolpyruvyl-6-hydroxy-3- cyclohexene-1-carboxylic-acid synthase; Catalyzes the thiamine diphosphate-dependent decarboxylation of 2-oxoglutarate and the subsequent addition of the resulting succinic semialdehyde-thiamine pyrophosphate anion to isochorismate to yield 2- succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate (SEPHCHC). Belongs to the TPP enzyme family. MenD subfamily. | 0.837 |
| EFL45858.1 | EFL45677.1 | HMPREF9296_0102 | HMPREF9296_1611 | Isochorismate synthase; Identified by match to protein family HMM PF00425; match to protein family HMM TIGR00543. | Hypothetical protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; overlaps another CDS with the same product name. | 0.522 |
| EFL45858.1 | EFL45855.1 | HMPREF9296_0102 | HMPREF9296_0103 | Isochorismate synthase; Identified by match to protein family HMM PF00425; match to protein family HMM TIGR00543. | Identified by match to protein family HMM PF03061; match to protein family HMM TIGR00369. | 0.865 |
| EFL45858.1 | EFL45862.1 | HMPREF9296_0102 | HMPREF9296_0098 | Isochorismate synthase; Identified by match to protein family HMM PF00425; match to protein family HMM TIGR00543. | Hypothetical protein. | 0.915 |
| EFL45858.1 | menB | HMPREF9296_0102 | HMPREF9296_0100 | Isochorismate synthase; Identified by match to protein family HMM PF00425; match to protein family HMM TIGR00543. | Naphthoate synthase; Converts o-succinylbenzoyl-CoA (OSB-CoA) to 1,4-dihydroxy-2- naphthoyl-CoA (DHNA-CoA). | 0.934 |
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