STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFL46601.1Sigma-54 interaction domain protein; Identified by match to protein family HMM PF00072; match to protein family HMM PF00158; match to protein family HMM PF02954. (445 aa)    
Predicted Functional Partners:
EFL46600.1
PAS domain S-box protein; Identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518; match to protein family HMM TIGR00229.
 
 0.894
rpoN
RNA polymerase sigma-54 factor; Identified by match to protein family HMM PF04552; match to protein family HMM PF04963; match to protein family HMM TIGR02395.
 
  
 0.839
EFL46248.1
ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein; This gene contains a nucleotide ambiguity which may be the result of a sequencing error; identified by match to protein family HMM PF02518.
   
 0.824
EFL46607.1
Identified by match to protein family HMM PF00582; match to protein family HMM PF02702.
   
 0.786
nifJ
Pyruvate synthase; Identified by match to protein family HMM PF00037; match to protein family HMM PF01558; match to protein family HMM PF01855; match to protein family HMM TIGR02176.
    
 0.744
EFL45628.1
Identified by match to protein family HMM PF00691; match to protein family HMM PF07676.
  
 
 0.655
EFL45595.1
Hypothetical protein.
  
 
 0.611
EFL46617.1
Potassium uptake protein, TrkH family; Identified by match to protein family HMM PF02386.
       0.601
ribB
3,4-dihydroxy-2-butanone-4-phosphate synthase; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; In the C-terminal section; belongs to the GTP cyclohydrolase II family.
    
  0.504
EFL46647.1
Hypothetical protein.
  
  
 0.503
Your Current Organism:
Prevotella disiens
NCBI taxonomy Id: 866771
Other names: P. disiens FB035-09AN, Prevotella disiens FB035-09AN
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.