Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
tonB-2TonB-dependent receptor; Identified by match to protein family HMM PF03544; match to protein family HMM PF05569; match to protein family HMM TIGR01352. (467 aa)    
Predicted Functional Partners:
EFL46678.1
Transcriptional regulator, BlaI/MecI/CopY family; Identified by match to protein family HMM PF03965.
 
 
 0.991
EFL46384.1
TonB-dependent receptor plug domain protein; Identified by match to protein family HMM PF00593; match to protein family HMM PF07715.
 
  0.855
EFL45415.1
Hypothetical protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift.
 
  0.779
EFL45200.1
Hypothetical protein.
 
  0.773
tonB_5
TonB-dependent receptor; Identified by match to protein family HMM PF00593; match to protein family HMM PF07715.
 
  0.770
EFL45412.1
Hypothetical protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by glimmer; putative.
 
  0.762
EFL45628.1
Identified by match to protein family HMM PF00691; match to protein family HMM PF07676.
   
 
 0.757
EFL47264.1
Hypothetical protein.
 
 
 0.752
EFL47256.1
Hypothetical protein.
 
 
 0.748
EFL47259.1
Transporter, MotA/TolQ/ExbB proton channel family protein; Identified by match to protein family HMM PF01618.
 
 
 0.712
Your Current Organism:
Prevotella disiens
NCBI taxonomy Id: 866771
Other names: P. disiens FB035-09AN, Prevotella disiens FB035-09AN
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