STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFL46424.1Hypothetical protein. (729 aa)    
Predicted Functional Partners:
EFL46456.1
Hypothetical protein.
 
     0.945
EFL46559.1
Hypothetical protein.
 
     0.785
EFL46439.1
Hypothetical protein.
       0.773
EFL46427.1
NgoFVII restriction endonuclease.
       0.757
dcm
DNA (cytosine-5-)-methyltransferase; Identified by match to protein family HMM PF00145; match to protein family HMM TIGR00675; overlaps another CDS with the same product name.
       0.757
dcm-2
DNA (cytosine-5-)-methyltransferase; Identified by match to protein family HMM PF00145; match to protein family HMM TIGR00675; overlaps another CDS with the same product name.
       0.757
EFL46970.1
FG-GAP repeat protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift.
  
     0.739
EFL46952.1
RHS repeat-associated core domain protein; Identified by match to protein family HMM PF05593; match to protein family HMM TIGR01643; match to protein family HMM TIGR03696.
  
     0.729
EFL47274.1
RHS repeat-associated core domain protein; Identified by match to protein family HMM PF05593; match to protein family HMM TIGR01643; match to protein family HMM TIGR03696.
  
     0.728
EFL46980.1
Hypothetical protein; Identified by glimmer; putative.
  
     0.709
Your Current Organism:
Prevotella disiens
NCBI taxonomy Id: 866771
Other names: P. disiens FB035-09AN, Prevotella disiens FB035-09AN
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.