STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFL47351.1TonB-dependent receptor plug domain protein; Identified by match to protein family HMM PF00593; match to protein family HMM PF07715. (811 aa)    
Predicted Functional Partners:
EFL47352.1
Hypothetical protein.
 
    0.939
EFL46994.1
MORN repeat protein; Identified by match to protein family HMM PF07661.
  
 
 0.743
EFL47362.1
Transcriptional regulator, TetR family; Identified by match to protein family HMM PF00440.
 
     0.698
EFL45703.1
Identified by match to protein family HMM TIGR01352.
  
   0.669
EFL45243.1
Hypothetical protein.
  
     0.625
EFL46243.1
Hypothetical protein.
  
    0.617
EFL47088.1
Hypothetical protein.
  
     0.591
EFL46163.1
Hypothetical protein.
  
 
   0.563
EFL46717.1
Hypothetical protein.
  
     0.559
EFL45951.1
Acyltransferase; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF01757.
  
     0.547
Your Current Organism:
Prevotella disiens
NCBI taxonomy Id: 866771
Other names: P. disiens FB035-09AN, Prevotella disiens FB035-09AN
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