Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
traJ-2Conjugative transposon TraJ protein; Identified by match to protein family HMM PF07863; match to protein family HMM TIGR03782. (345 aa)    
Predicted Functional Partners:
traK-2
Conjugative transposon TraK protein; Identified by match to protein family HMM TIGR03781.
 
   
 0.912
EFL44993.1
Conjugative transposon protein TraI.
 
     0.909
traG-2
Conjugation system ATPase, TraG family; Identified by match to protein family HMM TIGR03783.
 
   
 0.891
EFL44964.1
Conjugative transposon protein TraE.
 
     0.824
EFL44971.1
TraG family protein.
 
     0.800
EFL44986.1
Relaxase/mobilization nuclease domain protein; Identified by match to protein family HMM PF03432.
 
     0.799
traK-3
Conjugative transposon TraK protein; Identified by match to protein family HMM TIGR03781.
 
   
 0.780
EFL46479.1
Conjugative transposon protein TraI.
 
     0.779
EFL44997.1
Conjugative transposon protein TraA.
 
     0.778
EFL47304.1
Putative conjugative transposon TraK protein.
 
   
 0.778
Your Current Organism:
Prevotella disiens
NCBI taxonomy Id: 866771
Other names: P. disiens FB035-09AN, Prevotella disiens FB035-09AN
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