STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
traJ-2Conjugative transposon TraJ protein; Identified by match to protein family HMM PF07863; match to protein family HMM TIGR03782. (345 aa)    
Predicted Functional Partners:
traK-2
Conjugative transposon TraK protein; Identified by match to protein family HMM TIGR03781.
   
 0.913
EFL44993.1
Conjugative transposon protein TraI.
 
     0.911
traG-2
Conjugation system ATPase, TraG family; Identified by match to protein family HMM TIGR03783.
 
   
 0.891
EFL44964.1
Conjugative transposon protein TraE.
 
     0.824
EFL44971.1
TraG family protein.
 
     0.800
EFL44986.1
Relaxase/mobilization nuclease domain protein; Identified by match to protein family HMM PF03432.
 
     0.799
EFL46479.1
Conjugative transposon protein TraI.
 
     0.782
traK-3
Conjugative transposon TraK protein; Identified by match to protein family HMM TIGR03781.
   
 0.782
EFL44997.1
Conjugative transposon protein TraA.
 
     0.780
EFL47304.1
Putative conjugative transposon TraK protein.
 
   
 0.780
Your Current Organism:
Prevotella disiens
NCBI taxonomy Id: 866771
Other names: P. disiens FB035-09AN, Prevotella disiens FB035-09AN
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.