STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFL46140.1DNA binding domain, excisionase family; Identified by match to protein family HMM TIGR01764. (124 aa)    
Predicted Functional Partners:
EFL46161.1
Hypothetical protein.
 
     0.958
EFL46153.1
Hypothetical protein.
 
     0.903
EFL46134.1
Site-specific recombinase, phage integrase family; Identified by match to protein family HMM PF00589; Belongs to the 'phage' integrase family.
 
     0.828
EFL46195.1
DNA binding domain, excisionase family.
 
     0.827
EFL46214.1
Beta-lactamase.
  
     0.742
EFL46742.1
Identified by match to protein family HMM PF07927.
  
     0.650
EFL46289.1
DNA binding domain, excisionase family.
  
     0.645
EFL46143.1
Hypothetical protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift.
       0.624
EFL46257.1
Leucine Rich Repeat protein.
  
     0.602
EFL45287.1
Phage lysozyme; Identified by match to protein family HMM PF00959.
  
     0.584
Your Current Organism:
Prevotella disiens
NCBI taxonomy Id: 866771
Other names: P. disiens FB035-09AN, Prevotella disiens FB035-09AN
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.