STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFL45729.1TonB-linked outer membrane protein, SusC/RagA family; Identified by match to protein family HMM PF07715; match to protein family HMM TIGR04056. (939 aa)    
Predicted Functional Partners:
EFL45625.1
Hypothetical protein; Overlaps another CDS with the same product name.
     0.959
EFL45750.1
Hypothetical protein; Overlaps another CDS with the same product name.
       0.794
EFL45770.1
Hypothetical protein; Identified by glimmer; putative.
       0.757
EFL47369.1
Hypothetical protein; Identified by glimmer; putative.
  
     0.580
EFL45581.1
Hypothetical protein.
       0.575
tonB-2
TonB-dependent receptor; Identified by match to protein family HMM PF03544; match to protein family HMM PF05569; match to protein family HMM TIGR01352.
  
   0.529
tonB_6
TonB-dependent receptor; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF03544; match to protein family HMM TIGR01352.
  
   0.510
tonB_2
TonB-dependent receptor; Identified by match to protein family HMM PF00593; match to protein family HMM PF07715.
  
  
  0.488
EFL46718.1
Hypothetical protein.
  
   0.487
EFL47075.1
Hypothetical protein.
  
     0.482
Your Current Organism:
Prevotella disiens
NCBI taxonomy Id: 866771
Other names: P. disiens FB035-09AN, Prevotella disiens FB035-09AN
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.