STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFL45658.1Threonine/alanine tRNA ligase second additional domain protein; Identified by match to protein family HMM PF07973. (156 aa)    
Predicted Functional Partners:
EFL45744.1
Alpha amylase, catalytic domain protein; Identified by match to protein family HMM PF00128.
       0.829
EFL46792.1
Tetratricopeptide repeat protein; Identified by match to protein family HMM PF00515; match to protein family HMM PF07719.
 
 
  0.797
EFL46663.1
Conserved hypothetical protein TIGR03982; Identified by match to protein family HMM PF00515; match to protein family HMM PF07719.
   
  0.786
EFL45521.1
Tetratricopeptide repeat protein.
   
  0.783
EFL46830.1
Tetratricopeptide repeat protein; Identified by match to protein family HMM PF07719.
   
 0.782
EFL45810.1
Tetratricopeptide repeat protein; Identified by match to protein family HMM PF00515.
   
  0.769
EFL45468.1
Tetratricopeptide repeat protein; Identified by match to protein family HMM PF00515; match to protein family HMM PF07719.
   
  0.769
EFL47133.1
Tetratricopeptide repeat protein; Identified by match to protein family HMM PF00515; match to protein family HMM PF07719.
   
  0.769
EFL45303.1
Hypothetical protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by glimmer; putative.
    
  0.768
EFL44846.1
Hypothetical protein.
    
  0.768
Your Current Organism:
Prevotella disiens
NCBI taxonomy Id: 866771
Other names: P. disiens FB035-09AN, Prevotella disiens FB035-09AN
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.