Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| EFL45094.1 | EFL47214.1 | HMPREF9296_1894 | HMPREF9296_2011 | Sugar isomerase, KpsF/GutQ family; Identified by match to protein family HMM PF00571; match to protein family HMM PF01380; match to protein family HMM TIGR00393; Belongs to the SIS family. GutQ/KpsF subfamily. | 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family; Identified by match to protein family HMM TIGR01670. | 0.875 |
| EFL45094.1 | fabZ | HMPREF9296_1894 | HMPREF9296_1682 | Sugar isomerase, KpsF/GutQ family; Identified by match to protein family HMM PF00571; match to protein family HMM PF01380; match to protein family HMM TIGR00393; Belongs to the SIS family. GutQ/KpsF subfamily. | Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ; Catalyzes the hydrolysis of UDP-3-O-myristoyl-N- acetylglucosamine to form UDP-3-O-myristoylglucosamine and acetate, the committed step in lipid A biosynthesis; Belongs to the thioester dehydratase family. FabZ subfamily. | 0.705 |
| EFL45094.1 | kdsA | HMPREF9296_1894 | HMPREF9296_1893 | Sugar isomerase, KpsF/GutQ family; Identified by match to protein family HMM PF00571; match to protein family HMM PF01380; match to protein family HMM TIGR00393; Belongs to the SIS family. GutQ/KpsF subfamily. | 3-deoxy-8-phosphooctulonate synthase; Identified by match to protein family HMM PF00793; match to protein family HMM TIGR01362; Belongs to the KdsA family. | 0.994 |
| EFL45094.1 | kdsB | HMPREF9296_1894 | HMPREF9296_0310 | Sugar isomerase, KpsF/GutQ family; Identified by match to protein family HMM PF00571; match to protein family HMM PF01380; match to protein family HMM TIGR00393; Belongs to the SIS family. GutQ/KpsF subfamily. | 3-deoxy-D-manno-octulosonate cytidylyltransferase; Activates KDO (a required 8-carbon sugar) for incorporation into bacterial lipopolysaccharide in Gram-negative bacteria. | 0.877 |
| EFL45094.1 | lpxK | HMPREF9296_1894 | HMPREF9296_0982 | Sugar isomerase, KpsF/GutQ family; Identified by match to protein family HMM PF00571; match to protein family HMM PF01380; match to protein family HMM TIGR00393; Belongs to the SIS family. GutQ/KpsF subfamily. | Tetraacyldisaccharide 4'-kinase; Transfers the gamma-phosphate of ATP to the 4'-position of a tetraacyldisaccharide 1-phosphate intermediate (termed DS-1-P) to form tetraacyldisaccharide 1,4'-bis-phosphate (lipid IVA). | 0.825 |
| EFL45094.1 | waaA | HMPREF9296_1894 | HMPREF9296_0513 | Sugar isomerase, KpsF/GutQ family; Identified by match to protein family HMM PF00571; match to protein family HMM PF01380; match to protein family HMM TIGR00393; Belongs to the SIS family. GutQ/KpsF subfamily. | 3-deoxy-D-manno-octulosonic-acid transferase; Involved in lipopolysaccharide (LPS) biosynthesis. Catalyzes the transfer of 3-deoxy-D-manno-octulosonate (Kdo) residue(s) from CMP- Kdo to lipid IV(A), the tetraacyldisaccharide-1,4'-bisphosphate precursor of lipid A; Belongs to the glycosyltransferase group 1 family. | 0.793 |
| EFL46998.1 | EFL47141.1 | HMPREF9296_2013 | HMPREF9296_2010 | Bacterial transferase hexapeptide repeat protein; Identified by match to protein family HMM PF00132. | Hypothetical protein. | 0.524 |
| EFL46998.1 | EFL47198.1 | HMPREF9296_2013 | HMPREF9296_2009 | Bacterial transferase hexapeptide repeat protein; Identified by match to protein family HMM PF00132. | Hypothetical protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain one or more premature stops and/or frameshifts. | 0.400 |
| EFL46998.1 | EFL47214.1 | HMPREF9296_2013 | HMPREF9296_2011 | Bacterial transferase hexapeptide repeat protein; Identified by match to protein family HMM PF00132. | 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family; Identified by match to protein family HMM TIGR01670. | 0.595 |
| EFL46998.1 | maf | HMPREF9296_2013 | HMPREF9296_2012 | Bacterial transferase hexapeptide repeat protein; Identified by match to protein family HMM PF00132. | Septum formation protein Maf; Nucleoside triphosphate pyrophosphatase that hydrolyzes dTTP and UTP. May have a dual role in cell division arrest and in preventing the incorporation of modified nucleotides into cellular nucleic acids. | 0.740 |
| EFL47141.1 | EFL46998.1 | HMPREF9296_2010 | HMPREF9296_2013 | Hypothetical protein. | Bacterial transferase hexapeptide repeat protein; Identified by match to protein family HMM PF00132. | 0.524 |
| EFL47141.1 | EFL47198.1 | HMPREF9296_2010 | HMPREF9296_2009 | Hypothetical protein. | Hypothetical protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain one or more premature stops and/or frameshifts. | 0.686 |
| EFL47141.1 | EFL47214.1 | HMPREF9296_2010 | HMPREF9296_2011 | Hypothetical protein. | 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family; Identified by match to protein family HMM TIGR01670. | 0.768 |
| EFL47141.1 | maf | HMPREF9296_2010 | HMPREF9296_2012 | Hypothetical protein. | Septum formation protein Maf; Nucleoside triphosphate pyrophosphatase that hydrolyzes dTTP and UTP. May have a dual role in cell division arrest and in preventing the incorporation of modified nucleotides into cellular nucleic acids. | 0.726 |
| EFL47198.1 | EFL46998.1 | HMPREF9296_2009 | HMPREF9296_2013 | Hypothetical protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain one or more premature stops and/or frameshifts. | Bacterial transferase hexapeptide repeat protein; Identified by match to protein family HMM PF00132. | 0.400 |
| EFL47198.1 | EFL47141.1 | HMPREF9296_2009 | HMPREF9296_2010 | Hypothetical protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain one or more premature stops and/or frameshifts. | Hypothetical protein. | 0.686 |
| EFL47198.1 | EFL47214.1 | HMPREF9296_2009 | HMPREF9296_2011 | Hypothetical protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain one or more premature stops and/or frameshifts. | 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family; Identified by match to protein family HMM TIGR01670. | 0.646 |
| EFL47198.1 | maf | HMPREF9296_2009 | HMPREF9296_2012 | Hypothetical protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain one or more premature stops and/or frameshifts. | Septum formation protein Maf; Nucleoside triphosphate pyrophosphatase that hydrolyzes dTTP and UTP. May have a dual role in cell division arrest and in preventing the incorporation of modified nucleotides into cellular nucleic acids. | 0.620 |
| EFL47214.1 | EFL45094.1 | HMPREF9296_2011 | HMPREF9296_1894 | 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family; Identified by match to protein family HMM TIGR01670. | Sugar isomerase, KpsF/GutQ family; Identified by match to protein family HMM PF00571; match to protein family HMM PF01380; match to protein family HMM TIGR00393; Belongs to the SIS family. GutQ/KpsF subfamily. | 0.875 |
| EFL47214.1 | EFL46998.1 | HMPREF9296_2011 | HMPREF9296_2013 | 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family; Identified by match to protein family HMM TIGR01670. | Bacterial transferase hexapeptide repeat protein; Identified by match to protein family HMM PF00132. | 0.595 |
page 1 of 4