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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFL46998.1Bacterial transferase hexapeptide repeat protein; Identified by match to protein family HMM PF00132. (168 aa)    
Predicted Functional Partners:
cah
Carbonate dehydratase; Identified by match to protein family HMM PF00484.
    
 0.899
maf
Septum formation protein Maf; Nucleoside triphosphate pyrophosphatase that hydrolyzes dTTP and UTP. May have a dual role in cell division arrest and in preventing the incorporation of modified nucleotides into cellular nucleic acids.
  
   0.740
EFL47214.1
3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family; Identified by match to protein family HMM TIGR01670.
       0.595
EFL47141.1
Hypothetical protein.
       0.524
trxA
Thioredoxin; Identified by match to protein family HMM PF00085; match to protein family HMM TIGR01068.
    
   0.465
trxA-2
Thioredoxin; Identified by match to protein family HMM PF00085; match to protein family HMM TIGR01068; Belongs to the thioredoxin family.
    
   0.465
EFL45497.1
UDP-N-acetylglucosamine 2-epimerase; Identified by match to protein family HMM PF02350; Belongs to the UDP-N-acetylglucosamine 2-epimerase family.
    
  0.427
EFL47198.1
Hypothetical protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain one or more premature stops and/or frameshifts.
       0.400
Your Current Organism:
Prevotella disiens
NCBI taxonomy Id: 866771
Other names: P. disiens FB035-09AN, Prevotella disiens FB035-09AN
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