Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| EFL44803.1 | EFL45133.1 | HMPREF9296_0578 | HMPREF9296_1876 | HAD hydrolase, family IA, variant 3; Identified by match to protein family HMM PF00702; match to protein family HMM TIGR01509. | Alpha amylase, catalytic domain protein; Identified by match to protein family HMM PF00128; match to protein family HMM PF02806; match to protein family HMM PF02922. | 0.589 |
| EFL44803.1 | EFL45399.1 | HMPREF9296_0578 | HMPREF9296_0443 | HAD hydrolase, family IA, variant 3; Identified by match to protein family HMM PF00702; match to protein family HMM TIGR01509. | Competence/damage-inducible domain protein CinA; This gene contains a nucleotide ambiguity which may be the result of a sequencing error; identified by match to protein family HMM PF02464; match to protein family HMM TIGR00199; Belongs to the CinA family. | 0.540 |
| EFL44803.1 | EFL47004.1 | HMPREF9296_0578 | HMPREF9296_2015 | HAD hydrolase, family IA, variant 3; Identified by match to protein family HMM PF00702; match to protein family HMM TIGR01509. | HAD hydrolase, family IA, variant 3; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF00702; match to protein family HMM TIGR01509; match to protein family HMM TIGR01549. | 0.865 |
| EFL44803.1 | guaA | HMPREF9296_0578 | HMPREF9296_2598 | HAD hydrolase, family IA, variant 3; Identified by match to protein family HMM PF00702; match to protein family HMM TIGR01509. | GMP synthase (glutamine-hydrolyzing) domain protein; Catalyzes the synthesis of GMP from XMP. | 0.639 |
| EFL44803.1 | ribD | HMPREF9296_0578 | HMPREF9296_0710 | HAD hydrolase, family IA, variant 3; Identified by match to protein family HMM PF00702; match to protein family HMM TIGR01509. | Riboflavin biosynthesis protein RibD; Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'- phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)-pyrimidinedione 5'- phosphate; In the C-terminal section; belongs to the HTP reductase family. | 0.542 |
| EFL45133.1 | EFL44803.1 | HMPREF9296_1876 | HMPREF9296_0578 | Alpha amylase, catalytic domain protein; Identified by match to protein family HMM PF00128; match to protein family HMM PF02806; match to protein family HMM PF02922. | HAD hydrolase, family IA, variant 3; Identified by match to protein family HMM PF00702; match to protein family HMM TIGR01509. | 0.589 |
| EFL45133.1 | EFL47004.1 | HMPREF9296_1876 | HMPREF9296_2015 | Alpha amylase, catalytic domain protein; Identified by match to protein family HMM PF00128; match to protein family HMM PF02806; match to protein family HMM PF02922. | HAD hydrolase, family IA, variant 3; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF00702; match to protein family HMM TIGR01509; match to protein family HMM TIGR01549. | 0.595 |
| EFL45399.1 | EFL44803.1 | HMPREF9296_0443 | HMPREF9296_0578 | Competence/damage-inducible domain protein CinA; This gene contains a nucleotide ambiguity which may be the result of a sequencing error; identified by match to protein family HMM PF02464; match to protein family HMM TIGR00199; Belongs to the CinA family. | HAD hydrolase, family IA, variant 3; Identified by match to protein family HMM PF00702; match to protein family HMM TIGR01509. | 0.540 |
| EFL45399.1 | EFL47004.1 | HMPREF9296_0443 | HMPREF9296_2015 | Competence/damage-inducible domain protein CinA; This gene contains a nucleotide ambiguity which may be the result of a sequencing error; identified by match to protein family HMM PF02464; match to protein family HMM TIGR00199; Belongs to the CinA family. | HAD hydrolase, family IA, variant 3; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF00702; match to protein family HMM TIGR01509; match to protein family HMM TIGR01549. | 0.540 |
| EFL45399.1 | ribD | HMPREF9296_0443 | HMPREF9296_0710 | Competence/damage-inducible domain protein CinA; This gene contains a nucleotide ambiguity which may be the result of a sequencing error; identified by match to protein family HMM PF02464; match to protein family HMM TIGR00199; Belongs to the CinA family. | Riboflavin biosynthesis protein RibD; Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'- phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)-pyrimidinedione 5'- phosphate; In the C-terminal section; belongs to the HTP reductase family. | 0.400 |
| EFL47004.1 | EFL44803.1 | HMPREF9296_2015 | HMPREF9296_0578 | HAD hydrolase, family IA, variant 3; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF00702; match to protein family HMM TIGR01509; match to protein family HMM TIGR01549. | HAD hydrolase, family IA, variant 3; Identified by match to protein family HMM PF00702; match to protein family HMM TIGR01509. | 0.865 |
| EFL47004.1 | EFL45133.1 | HMPREF9296_2015 | HMPREF9296_1876 | HAD hydrolase, family IA, variant 3; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF00702; match to protein family HMM TIGR01509; match to protein family HMM TIGR01549. | Alpha amylase, catalytic domain protein; Identified by match to protein family HMM PF00128; match to protein family HMM PF02806; match to protein family HMM PF02922. | 0.595 |
| EFL47004.1 | EFL45399.1 | HMPREF9296_2015 | HMPREF9296_0443 | HAD hydrolase, family IA, variant 3; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF00702; match to protein family HMM TIGR01509; match to protein family HMM TIGR01549. | Competence/damage-inducible domain protein CinA; This gene contains a nucleotide ambiguity which may be the result of a sequencing error; identified by match to protein family HMM PF02464; match to protein family HMM TIGR00199; Belongs to the CinA family. | 0.540 |
| EFL47004.1 | EFL47079.1 | HMPREF9296_2015 | HMPREF9296_2018 | HAD hydrolase, family IA, variant 3; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF00702; match to protein family HMM TIGR01509; match to protein family HMM TIGR01549. | Metallo-beta-lactamase domain protein; Identified by match to protein family HMM PF00753. | 0.630 |
| EFL47004.1 | EFL47090.1 | HMPREF9296_2015 | HMPREF9296_2016 | HAD hydrolase, family IA, variant 3; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF00702; match to protein family HMM TIGR01509; match to protein family HMM TIGR01549. | Hypothetical protein. | 0.681 |
| EFL47004.1 | gidB | HMPREF9296_2015 | HMPREF9296_2017 | HAD hydrolase, family IA, variant 3; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF00702; match to protein family HMM TIGR01509; match to protein family HMM TIGR01549. | 16S rRNA methyltransferase GidB; Specifically methylates the N7 position of a guanine in 16S rRNA; Belongs to the methyltransferase superfamily. RNA methyltransferase RsmG family. | 0.689 |
| EFL47004.1 | guaA | HMPREF9296_2015 | HMPREF9296_2598 | HAD hydrolase, family IA, variant 3; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF00702; match to protein family HMM TIGR01509; match to protein family HMM TIGR01549. | GMP synthase (glutamine-hydrolyzing) domain protein; Catalyzes the synthesis of GMP from XMP. | 0.590 |
| EFL47004.1 | panB | HMPREF9296_2015 | HMPREF9296_2014 | HAD hydrolase, family IA, variant 3; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF00702; match to protein family HMM TIGR01509; match to protein family HMM TIGR01549. | 3-methyl-2-oxobutanoate hydroxymethyltransferase; Catalyzes the reversible reaction in which hydroxymethyl group from 5,10-methylenetetrahydrofolate is transferred onto alpha- ketoisovalerate to form ketopantoate; Belongs to the PanB family. | 0.785 |
| EFL47004.1 | ribD | HMPREF9296_2015 | HMPREF9296_0710 | HAD hydrolase, family IA, variant 3; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF00702; match to protein family HMM TIGR01509; match to protein family HMM TIGR01549. | Riboflavin biosynthesis protein RibD; Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'- phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)-pyrimidinedione 5'- phosphate; In the C-terminal section; belongs to the HTP reductase family. | 0.542 |
| EFL47004.1 | ruvC | HMPREF9296_2015 | HMPREF9296_2019 | HAD hydrolase, family IA, variant 3; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF00702; match to protein family HMM TIGR01509; match to protein family HMM TIGR01549. | Crossover junction endodeoxyribonuclease RuvC; Nuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves the cruciform structure in supercoiled DNA by nicking to strands with the same polarity at sites symmetrically opposed at the junction in the homologous arms and leaves a 5'-terminal phosphate and a 3'-terminal hydroxyl group. | 0.628 |
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