EFL47090.1 protein (Prevotella disiens) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

EFL47090.1

Hypothetical protein. (232 aa)

Predicted Functional Partners:

gidB

0.793

EFL47079.1

0.716

ruvC

0.716

EFL47004.1

0.640

panB

0.607

EFL47144.1

0.479

Your Current Organism:

Prevotella disiens

NCBI taxonomy Id: 866771
Other names: P. disiens FB035-09AN, Prevotella disiens FB035-09AN

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
EFL47004.1	EFL47079.1	HMPREF9296_2015	HMPREF9296_2018	HAD hydrolase, family IA, variant 3; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF00702; match to protein family HMM TIGR01509; match to protein family HMM TIGR01549.	Metallo-beta-lactamase domain protein; Identified by match to protein family HMM PF00753.	0.578
EFL47004.1	EFL47090.1	HMPREF9296_2015	HMPREF9296_2016	HAD hydrolase, family IA, variant 3; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF00702; match to protein family HMM TIGR01509; match to protein family HMM TIGR01549.	Hypothetical protein.	0.640
EFL47004.1	gidB	HMPREF9296_2015	HMPREF9296_2017	HAD hydrolase, family IA, variant 3; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF00702; match to protein family HMM TIGR01509; match to protein family HMM TIGR01549.	16S rRNA methyltransferase GidB; Specifically methylates the N7 position of a guanine in 16S rRNA; Belongs to the methyltransferase superfamily. RNA methyltransferase RsmG family.	0.626
EFL47004.1	panB	HMPREF9296_2015	HMPREF9296_2014	HAD hydrolase, family IA, variant 3; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF00702; match to protein family HMM TIGR01509; match to protein family HMM TIGR01549.	3-methyl-2-oxobutanoate hydroxymethyltransferase; Catalyzes the reversible reaction in which hydroxymethyl group from 5,10-methylenetetrahydrofolate is transferred onto alpha- ketoisovalerate to form ketopantoate; Belongs to the PanB family.	0.763
EFL47004.1	ruvC	HMPREF9296_2015	HMPREF9296_2019	HAD hydrolase, family IA, variant 3; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF00702; match to protein family HMM TIGR01509; match to protein family HMM TIGR01549.	Crossover junction endodeoxyribonuclease RuvC; Nuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves the cruciform structure in supercoiled DNA by nicking to strands with the same polarity at sites symmetrically opposed at the junction in the homologous arms and leaves a 5'-terminal phosphate and a 3'-terminal hydroxyl group.	0.578
EFL47079.1	EFL47004.1	HMPREF9296_2018	HMPREF9296_2015	Metallo-beta-lactamase domain protein; Identified by match to protein family HMM PF00753.	HAD hydrolase, family IA, variant 3; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF00702; match to protein family HMM TIGR01509; match to protein family HMM TIGR01549.	0.578
EFL47079.1	EFL47090.1	HMPREF9296_2018	HMPREF9296_2016	Metallo-beta-lactamase domain protein; Identified by match to protein family HMM PF00753.	Hypothetical protein.	0.716
EFL47079.1	EFL47144.1	HMPREF9296_2018	HMPREF9296_2020	Metallo-beta-lactamase domain protein; Identified by match to protein family HMM PF00753.	Hypothetical protein.	0.597
EFL47079.1	gidB	HMPREF9296_2018	HMPREF9296_2017	Metallo-beta-lactamase domain protein; Identified by match to protein family HMM PF00753.	16S rRNA methyltransferase GidB; Specifically methylates the N7 position of a guanine in 16S rRNA; Belongs to the methyltransferase superfamily. RNA methyltransferase RsmG family.	0.738
EFL47079.1	panB	HMPREF9296_2018	HMPREF9296_2014	Metallo-beta-lactamase domain protein; Identified by match to protein family HMM PF00753.	3-methyl-2-oxobutanoate hydroxymethyltransferase; Catalyzes the reversible reaction in which hydroxymethyl group from 5,10-methylenetetrahydrofolate is transferred onto alpha- ketoisovalerate to form ketopantoate; Belongs to the PanB family.	0.551
EFL47079.1	ruvC	HMPREF9296_2018	HMPREF9296_2019	Metallo-beta-lactamase domain protein; Identified by match to protein family HMM PF00753.	Crossover junction endodeoxyribonuclease RuvC; Nuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves the cruciform structure in supercoiled DNA by nicking to strands with the same polarity at sites symmetrically opposed at the junction in the homologous arms and leaves a 5'-terminal phosphate and a 3'-terminal hydroxyl group.	0.817
EFL47090.1	EFL47004.1	HMPREF9296_2016	HMPREF9296_2015	Hypothetical protein.	HAD hydrolase, family IA, variant 3; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF00702; match to protein family HMM TIGR01509; match to protein family HMM TIGR01549.	0.640
EFL47090.1	EFL47079.1	HMPREF9296_2016	HMPREF9296_2018	Hypothetical protein.	Metallo-beta-lactamase domain protein; Identified by match to protein family HMM PF00753.	0.716
EFL47090.1	EFL47144.1	HMPREF9296_2016	HMPREF9296_2020	Hypothetical protein.	Hypothetical protein.	0.479
EFL47090.1	gidB	HMPREF9296_2016	HMPREF9296_2017	Hypothetical protein.	16S rRNA methyltransferase GidB; Specifically methylates the N7 position of a guanine in 16S rRNA; Belongs to the methyltransferase superfamily. RNA methyltransferase RsmG family.	0.793
EFL47090.1	panB	HMPREF9296_2016	HMPREF9296_2014	Hypothetical protein.	3-methyl-2-oxobutanoate hydroxymethyltransferase; Catalyzes the reversible reaction in which hydroxymethyl group from 5,10-methylenetetrahydrofolate is transferred onto alpha- ketoisovalerate to form ketopantoate; Belongs to the PanB family.	0.607
EFL47090.1	ruvC	HMPREF9296_2016	HMPREF9296_2019	Hypothetical protein.	Crossover junction endodeoxyribonuclease RuvC; Nuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves the cruciform structure in supercoiled DNA by nicking to strands with the same polarity at sites symmetrically opposed at the junction in the homologous arms and leaves a 5'-terminal phosphate and a 3'-terminal hydroxyl group.	0.716
EFL47144.1	EFL47079.1	HMPREF9296_2020	HMPREF9296_2018	Hypothetical protein.	Metallo-beta-lactamase domain protein; Identified by match to protein family HMM PF00753.	0.597
EFL47144.1	EFL47090.1	HMPREF9296_2020	HMPREF9296_2016	Hypothetical protein.	Hypothetical protein.	0.479
EFL47144.1	gidB	HMPREF9296_2020	HMPREF9296_2017	Hypothetical protein.	16S rRNA methyltransferase GidB; Specifically methylates the N7 position of a guanine in 16S rRNA; Belongs to the methyltransferase superfamily. RNA methyltransferase RsmG family.	0.554