Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EFL45915.1Peptidase, M28 family; Identified by match to protein family HMM PF04389. (340 aa)    
Predicted Functional Partners:
EFL45945.1
Hypothetical protein.
 
     0.637
EFL46382.1
Outer membrane protein; Identified by match to protein family HMM PF03938.
  
     0.591
EFL46045.1
Hypothetical protein.
       0.539
EFL46244.1
Hypothetical protein.
  
    0.532
EFL46562.1
Putative DNA helicase.
  
     0.482
EFL45490.1
Peptidase, S8/S53 family; Identified by match to protein family HMM PF00082.
  
  
 0.435
EFL46401.1
Hypothetical protein.
  
     0.418
EFL47134.1
TonB family domain protein.
  
     0.406
EFL46377.1
Tetratricopeptide repeat protein; Identified by match to protein family HMM PF00515; match to protein family HMM PF07719.
 
     0.403
Your Current Organism:
Prevotella disiens
NCBI taxonomy Id: 866771
Other names: P. disiens FB035-09AN, Prevotella disiens FB035-09AN
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