Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EFL46717.1Hypothetical protein. (402 aa)    
Predicted Functional Partners:
EFL46863.1
TonB-dependent receptor plug domain protein; Identified by match to protein family HMM PF07715.
 
     0.911
EFL46886.1
Hypothetical protein.
 
    0.911
EFL47016.1
Hypothetical protein.
 
    0.785
EFL47104.1
TonB-dependent receptor plug domain protein; Identified by match to protein family HMM PF07715.
 
     0.784
EFL46543.1
Hypothetical protein.
  
     0.635
EFL46764.1
Hypothetical protein.
       0.635
EFL47352.1
Hypothetical protein.
  
     0.622
EFL46869.1
Peptidase M16 inactive domain protein; Identified by match to protein family HMM PF00675; match to protein family HMM PF05193; Belongs to the peptidase M16 family.
       0.602
EFL47095.1
Hypothetical protein.
  
     0.583
EFL47351.1
TonB-dependent receptor plug domain protein; Identified by match to protein family HMM PF00593; match to protein family HMM PF07715.
  
     0.559
Your Current Organism:
Prevotella disiens
NCBI taxonomy Id: 866771
Other names: P. disiens FB035-09AN, Prevotella disiens FB035-09AN
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