STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MTCT_0474Putative cationic amino acid transporter. (423 aa)    
Predicted Functional Partners:
mfnA
Glutamate decarboxylase; Catalyzes the decarboxylation of L-tyrosine to produce tyramine for methanofuran biosynthesis. Can also catalyze the decarboxylation of L-aspartate to produce beta-alanine for coenzyme A (CoA) biosynthesis; Belongs to the group II decarboxylase family. MfnA subfamily.
  
  
 0.719
truB
H/ACA RNA-protein complex component; Could be responsible for synthesis of pseudouridine from uracil-55 in the psi GC loop of transfer RNAs; Belongs to the pseudouridine synthase TruB family. Type 2 subfamily.
   
 
 0.682
trpF
5'-phosphoribosyl anthranilate isomerase; Belongs to the TrpF family.
   
 
 0.682
MTCT_0473
Putative helicase.
  
 
 0.610
MTCT_1694
Sodium/proline symporter; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family.
 
 
 0.596
MTCT_0706
Sodium-dependent transporter protein.
  
  
 0.576
pdaD
Putative pyruvoyl-dependent arginine decarboxylase; Belongs to the PdaD family.
     
 0.565
MTCT_0894
Alcohol dehydrogenase.
  
 
 0.556
MTCT_1736
GTP-binding protein.
  
 
 0.556
MTCT_1427
Glutamine synthetase.
  
  
 0.551
Your Current Organism:
Methanothermobacter sp. CaT2
NCBI taxonomy Id: 866790
Other names: M. sp. CaT2
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