STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MTCT_0656phospho-N-acetylmuramoyl-pentapeptide- transferase. (350 aa)    
Predicted Functional Partners:
MTCT_0655
UDP-N-acetylmuramyl-tripeptide synthetase.
 
  
 0.991
MTCT_0657
Conserved hypothetical protein.
 
  
 0.947
MTCT_0791
Putative UDP-N-acetylmuramyl tripeptide synthetase.
 
 
 0.830
MTCT_0659
Putative methyltransferase.
 
     0.746
MTCT_0456
Putative UDP-N-acetylmuramyl tripeptide synthetase.
 
     0.728
MTCT_0658
Putative protease.
       0.727
MTCT_0457
Putative UDP-N-acetylmuramyl tripeptide synthetase.
  
     0.725
rpl13
50S ribosomal protein L13P; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.
  
    0.659
rps9
30S ribosomal protein S9P; Belongs to the universal ribosomal protein uS9 family.
  
    0.659
MTCT_0932
Rod shape-determining protein.
 
  
 0.653
Your Current Organism:
Methanothermobacter sp. CaT2
NCBI taxonomy Id: 866790
Other names: M. sp. CaT2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.