STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MTCT_0806Conserved hypothetical protein. (97 aa)    
Predicted Functional Partners:
MTCT_0805
Demethylmenaquinone methyltransferase.
       0.882
MTCT_0804
Conserved hypothetical protein.
 
     0.818
MTCT_0488
Conserved hypothetical protein.
 
     0.811
MTCT_0807
Conserved hypothetical protein; Belongs to the UPF0292 family.
 
     0.604
MTCT_0809
Conserved hypothetical protein.
 
     0.544
dnaG
DNA primase; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication. Also part of the exosome, which is a complex involved in RNA degradation. Acts as a poly(A)-binding protein that enhances the interaction between heteropolymeric, adenine-rich transcripts and the exosome.
 
     0.480
MTCT_0878
Putative transcriptional regulator.
  
     0.451
MTCT_1193
Conserved hypothetical protein; Belongs to the UPF0215 family.
  
     0.446
tfb
Transcription initiation factor IIB; Stabilizes TBP binding to an archaeal box-A promoter. Also responsible for recruiting RNA polymerase II to the pre-initiation complex (DNA-TBP-TFIIB).
       0.425
rpl39e
50S ribosomal protein L39e; Belongs to the eukaryotic ribosomal protein eL39 family.
  
     0.425
Your Current Organism:
Methanothermobacter sp. CaT2
NCBI taxonomy Id: 866790
Other names: M. sp. CaT2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.