Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
MTCT_1663Conserved hypothetical protein. (146 aa)    
Predicted Functional Partners:
tbp
Transcriptional factor; General factor that plays a role in the activation of archaeal genes transcribed by RNA polymerase. Binds specifically to the TATA box promoter element which lies close to the position of transcription initiation.
   
 0.841
MTCT_1662
Conserved hypothetical protein.
       0.792
MTCT_1427
Glutamine synthetase.
  
 
 0.720
MTCT_0056
Conserved hypothetical protein.
  
     0.691
MTCT_1291
Conserved hypothetical protein.
  
     0.680
MTCT_0238
Prenyltransferase.
 
     0.644
MTCT_1661
Conserved hypothetical protein.
       0.628
MTCT_0418
Conserved hypothetical protein.
  
     0.598
MTCT_0431
Conserved hypothetical protein.
 
     0.595
MTCT_1660
Homoserine O-acetyltransferase.
       0.576
Your Current Organism:
Methanothermobacter sp. CaT2
NCBI taxonomy Id: 866790
Other names: M. sp. CaT2
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