STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CCG44494.1Acetyltransferase, GNAT family. (121 aa)    
Predicted Functional Partners:
CCG44495.1
Hypothetical protein.
 
     0.943
CCG44817.1
Hypothetical protein.
  
     0.572
CCG44496.1
Stage V sporulation protein R.
  
    0.540
CCG44510.1
Hypothetical protein.
  
     0.466
CCG43919.1
Hypothetical protein.
  
     0.448
CCG46536.1
Hypothetical protein.
  
     0.432
rnc
Ribonuclease III; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism.
   
    0.412
CCG47153.1
Hypothetical protein.
  
     0.410
CCG44268.1
Saccharopine dehydrogenase.
  
    0.401
CCG45753.1
Acetyltransferase, GNAT family.
 
   0.400
Your Current Organism:
Halobacillus halophilus
NCBI taxonomy Id: 866895
Other names: H. halophilus DSM 2266, Halobacillus halophilus DSM 2266, Halobacillus halophilus str. DSM 2266, Halobacillus halophilus strain DSM 2266
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.