STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sh-1Small acid-soluble spore protein 1; SASP are bound to spore DNA. They are double-stranded DNA- binding proteins that cause DNA to change to an a-like conformation. They protect the DNA backbone from chemical and enzymatic cleavage and are thus involved in dormant spore's high resistance to UV light. (72 aa)    
Predicted Functional Partners:
CCG45465.1
Spore coat protein.
  
  
 0.775
gerQ
Spore coat protein GerQ.
  
    0.747
ydcC
Hypothetical protein.
  
     0.746
CCG45689.1
Stage V sporulation protein AF.
  
     0.739
gpr
Germination proteinase; Initiates the rapid degradation of small, acid-soluble proteins during spore germination; Belongs to the peptidase A25 family.
  
  
 0.736
CCG45692.1
Stage V sporulation protein AC.
  
  
 0.726
cwlJ1
Cell wall hydrolase CwlJ.
  
    0.722
cwlJ2
Cell wall hydrolase CwlJ.
  
    0.716
CCG43461.1
Conserved hypothetical protein.
  
     0.711
CCG45866.1
Stage V sporulation protein AF.
  
   
 0.697
Your Current Organism:
Halobacillus halophilus
NCBI taxonomy Id: 866895
Other names: H. halophilus DSM 2266, Halobacillus halophilus DSM 2266, Halobacillus halophilus str. DSM 2266, Halobacillus halophilus strain DSM 2266
Server load: low (32%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.