STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
medPositive regulator of ComK. (319 aa)    
Predicted Functional Partners:
CCG45445.1
ABC-type transport system ATP-binding protein (probable substrate sugar).
 
  
 0.944
CCG45447.1
ABC-type transport system permease protein (probable substrate sugar); Belongs to the binding-protein-dependent transport system permease family.
 
  
 0.901
CCG45446.1
ABC-type transport system permease protein (probable substrate sugar); Belongs to the binding-protein-dependent transport system permease family.
 
  
 0.877
CCG44642.1
Hypothetical protein.
       0.773
CCG44640.1
Hypothetical protein.
       0.556
rbsA
ABC-type transport system ATP-binding protein (probable substrate ribose); Part of the ABC transporter complex RbsABC involved in ribose import. Responsible for energy coupling to the transport system. Belongs to the ABC transporter superfamily. Ribose importer (TC 3.A.1.2.1) family.
 
   
 0.539
CCG45228.1
Sporulation sigma-E factor processing peptidase (stage II sporulation protein GA); Probable aspartic protease that is responsible for the proteolytic cleavage of the RNA polymerase sigma E factor (SigE/spoIIGB) to yield the active peptide in the mother cell during sporulation. Responds to a signal from the forespore that is triggered by the extracellular signal protein SpoIIR.
   
    0.468
CCG44639.1
Hypothetical protein.
       0.462
Your Current Organism:
Halobacillus halophilus
NCBI taxonomy Id: 866895
Other names: H. halophilus DSM 2266, Halobacillus halophilus DSM 2266, Halobacillus halophilus str. DSM 2266, Halobacillus halophilus strain DSM 2266
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