STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CCG44781.1ABC-type transport system permease protein. (366 aa)    
Predicted Functional Partners:
CCG44782.1
ABC-type transport system ATP-binding protein.
 
  
 0.962
CCG44200.1
ABC-type transport system ATP-binding protein.
 
  
 0.724
CCG45082.1
ABC-type transport system ATP-binding protein (probable substrate antibiotic).
 
  
 0.615
CCG45021.1
Conserved hypothetical protein.
 
  
 0.605
CCG45022.1
Conserved hypothetical protein.
 
    0.596
CCG47424.1
ABC-type transport system ATP-binding protein.
 
  
 0.507
CCG47495.1
ABC-type transport system ATP-binding protein (probable substrate antibiotic).
 
  
 0.506
CCG45020.1
Hypothetical protein.
  
  
 0.469
CCG45079.1
FMN-containing NADPH-linked nitro/flavin reductase; Belongs to the flavin oxidoreductase frp family.
  
    0.465
CCG45523.1
Nitroreductase family protein.
  
    0.465
Your Current Organism:
Halobacillus halophilus
NCBI taxonomy Id: 866895
Other names: H. halophilus DSM 2266, Halobacillus halophilus DSM 2266, Halobacillus halophilus str. DSM 2266, Halobacillus halophilus strain DSM 2266
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.