Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
yozCHypothetical protein. (70 aa)    
Predicted Functional Partners:
CCG45199.1
Conserved hypothetical protein.
  
     0.729
ytpQ
Hypothetical protein; Belongs to the UPF0354 family.
  
     0.708
ytlQ
Hypothetical protein.
  
     0.692
CCG46845.1
Hypothetical protein; Belongs to the sigma-70 factor family. ECF subfamily.
  
     0.636
secF
Protein-export membrane protein SecDF; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA; Belongs to the SecD/SecF family. SecD subfamily.
  
     0.612
comK
Competence protein ComK.
  
     0.606
CCG45176.1
Hypothetical protein.
  
     0.601
trpP
Probable tryptophan transport protein.
  
     0.590
mhqD
Probable hydrolase MhqD.
       0.576
comGD
ComG operon protein 4.
  
     0.568
Your Current Organism:
Halobacillus halophilus
NCBI taxonomy Id: 866895
Other names: H. halophilus DSM 2266, Halobacillus halophilus DSM 2266, Halobacillus halophilus str. DSM 2266, Halobacillus halophilus strain DSM 2266
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