STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yteJRDD domain protein. (179 aa)    
Predicted Functional Partners:
sppA
Probable signal peptide peptidase SppA.
 
  
 0.985
ydbT
UPF0699 family protein YdbT.
 
    0.683
aspS
aspartyl-tRNA synthetase; Catalyzes the attachment of L-aspartate to tRNA(Asp) in a two-step reaction: L-aspartate is first activated by ATP to form Asp- AMP and then transferred to the acceptor end of tRNA(Asp). Belongs to the class-II aminoacyl-tRNA synthetase family. Type 1 subfamily.
     
 0.545
CCG47359.1
ABC-type transport system permease protein.
 
     0.498
ydbS
UPF0699 family protein YdbS.
 
    0.465
yfhQ
A/G-specific adenine glycosylase; Adenine glycosylase active on G-A mispairs.
      
 0.460
yabO
S4 domain protein.
  
    0.454
yckC2
RDD domain protein.
  
   
 0.449
cypA
Cytochrome P450.
       0.404
Your Current Organism:
Halobacillus halophilus
NCBI taxonomy Id: 866895
Other names: H. halophilus DSM 2266, Halobacillus halophilus DSM 2266, Halobacillus halophilus str. DSM 2266, Halobacillus halophilus strain DSM 2266
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.