STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CCG47308.1M23/M37 family peptidase. (493 aa)    
Predicted Functional Partners:
ftsX
Cell-division protein; Part of the ABC transporter FtsEX involved in asymmetric cellular division facilitating the initiation of sporulation. Belongs to the ABC-4 integral membrane protein family. FtsX subfamily.
 
  
 0.953
ftsE
ABC-type transport system ATP-binding protein; Part of the ABC transporter FtsEX involved in cellular division.
 
  
 0.872
lytE2
Homolog to cell wall hydrolase LytE.
 
  
 0.736
CCG47310.1
Hypothetical protein.
       0.655
fliY
Flagellar motor switch protein.
   
   0.654
pbpG
Penicillin binding protein 2D.
 
   
 0.594
yocH3
Conserved hypothetical protein.
 
  
 0.570
yocH4
Conserved hypothetical protein.
 
  
 0.570
ponA
Penicillin-binding proteins 1A/1B.
 
   
 0.567
CCG46790.1
Probable N-acetylmuramoyl-L-alanine amidase.
 
  
 0.566
Your Current Organism:
Halobacillus halophilus
NCBI taxonomy Id: 866895
Other names: H. halophilus DSM 2266, Halobacillus halophilus DSM 2266, Halobacillus halophilus str. DSM 2266, Halobacillus halophilus strain DSM 2266
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