STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFO97410.1NADH-FMN oxidoreductase RutF, flavin reductase (DIM6/NTAB) family. (215 aa)    
Predicted Functional Partners:
SFP58053.1
Pyruvate ferredoxin oxidoreductase gamma subunit.
    
 0.947
SFP06644.1
Rubrerythrin.
  
 0.869
SFP32273.1
NADPH-dependent glutamate synthase beta chain.
  
  
 0.831
SFP23859.1
Glutamate synthase (NADPH/NADH) large chain.
    
  0.805
SFP58076.1
Pyruvate ferredoxin oxidoreductase delta subunit.
     
 0.758
SFO97384.1
Hypothetical protein.
       0.709
SFP01214.1
NADPH-dependent 2,4-dienoyl-CoA reductase, sulfur reductase.
  
  
 0.662
SFO97457.1
Hypothetical protein.
       0.623
SFP01190.1
Ferric uptake regulator family protein.
  
  
 0.569
SFO96528.1
FAD/FMN-containing dehydrogenase.
    
 0.554
Your Current Organism:
Ruminobacter amylophilus
NCBI taxonomy Id: 867
Other names: ATCC 29744, Bacteroides amylophilus, R. amylophilus, Ruminobacter amylophilum
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