STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFP01613.1Fumarate reductase subunit C. (135 aa)    
Predicted Functional Partners:
SFP01594.1
Succinate dehydrogenase subunit D.
 
 0.999
SFP01641.1
Fumarate reductase iron-sulfur subunit.
 
 0.999
SFP01661.1
Succinate dehydrogenase subunit A.
 
 0.999
SFO98567.1
Adenylylsulfate reductase subunit A.
  
 0.928
SFP05324.1
Fumarate hydratase, class I.
     
 0.909
SFP53603.1
O-succinylbenzoate synthase.
 
     0.740
SFP23383.1
Hypothetical protein.
  
     0.587
SFP17533.1
Uncharacterized membrane protein YjjB, DUF3815 family.
  
     0.551
SFP71477.1
Hypothetical protein.
  
     0.481
SFP33518.1
2-succinyl-6-hydroxy-2, 4-cyclohexadiene-1-carboxylate synthase.
  
     0.471
Your Current Organism:
Ruminobacter amylophilus
NCBI taxonomy Id: 867
Other names: ATCC 29744, Bacteroides amylophilus, R. amylophilus, Ruminobacter amylophilum
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.