STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFP02273.1DNA helicase/exodeoxyribonuclease V, alpha subunit. (797 aa)    
Predicted Functional Partners:
SFP02230.1
DNA helicase/exodeoxyribonuclease V, gamma subunit.
 0.999
SFP02250.1
DNA helicase/exodeoxyribonuclease V, beta subunit.
 0.999
SFP64587.1
DNA polymerase III beta subunit, central domain.
  
 
 0.882
SFP03820.1
tRNA pseudouridine55 synthase.
   
 
  0.876
SFP55176.1
Replicative DNA helicase.
     
 0.698
SFP00148.1
DNA primase.
  
 
 0.659
SFP53568.1
SWIM zinc finger.
  
 0.618
SFP36376.1
SNF2 family N-terminal domain-containing protein.
  
 0.613
SFP37414.1
SNF2 family N-terminal domain-containing protein.
  
 0.613
SFP60110.1
SNF2 family N-terminal domain-containing protein.
  
 0.613
Your Current Organism:
Ruminobacter amylophilus
NCBI taxonomy Id: 867
Other names: ATCC 29744, Bacteroides amylophilus, R. amylophilus, Ruminobacter amylophilum
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.