STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFP04663.1Penicillin-binding protein 1C. (675 aa)    
Predicted Functional Partners:
SFP58196.1
Penicillin-binding protein 1A.
  
  
0.938
SFO97670.1
Penicillin-binding protein 1B.
  
  
0.935
SFP04595.1
Uncharacterized conserved protein YfaS, alpha-2-macroglobulin family.
 
   
 0.812
SFP04641.1
Voltage-gated sodium channel.
       0.737
SFP18218.1
Murein DD-endopeptidase.
  
     0.566
SFP00372.1
Peptidase family M23.
  
     0.508
SFP04735.1
AMP-binding enzyme C-terminal domain-containing protein.
    
  0.508
SFP04757.1
Hypothetical protein.
    
  0.508
SFP55357.1
Lipoprotein NlpD.
  
     0.489
SFP12882.1
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB.
  
     0.459
Your Current Organism:
Ruminobacter amylophilus
NCBI taxonomy Id: 867
Other names: ATCC 29744, Bacteroides amylophilus, R. amylophilus, Ruminobacter amylophilum
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