STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFP10039.1Ribonuclease-3. (238 aa)    
Predicted Functional Partners:
SFP10008.1
GTP-binding protein Era.
 
  
 0.988
SFP31006.1
Large subunit ribosomal protein L32.
 
   0.973
SFP34829.1
Small subunit ribosomal protein S9.
   
 
 0.973
SFP10070.1
Signal peptidase I.
 
  
 0.971
SFP00055.1
Large subunit ribosomal protein L27.
  
 
 0.970
SFP34797.1
Large subunit ribosomal protein L13.
   
 
 0.970
SFP02153.1
SSU ribosomal protein S6P.
   
 
 0.967
SFP35701.1
Large subunit ribosomal protein L19.
  
 
 0.967
SFP41978.1
Small subunit ribosomal protein S15.
   
 
 0.966
SFP10936.1
Large subunit ribosomal protein L17.
   
 
 0.964
Your Current Organism:
Ruminobacter amylophilus
NCBI taxonomy Id: 867
Other names: ATCC 29744, Bacteroides amylophilus, R. amylophilus, Ruminobacter amylophilum
Server load: low (20%) [HD]