STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFP13127.1Septum formation protein. (173 aa)    
Predicted Functional Partners:
SFP13096.1
Ribonuclease G.
  
    0.839
SFP13173.1
Rod shape-determining protein MreC.
  
  
 0.833
SFP13076.1
Nitrilase.
       0.791
SFP13051.1
TldD protein.
       0.781
SFP21977.1
Protein-tyrosine phosphatase.
      0.745
SFP13143.1
Rod shape-determining protein MreD.
  
  
 0.712
SFP62103.1
Phosphoglycerate dehydrogenase.
 
  
   0.649
SFP13200.1
Rod shape-determining protein MreB.
  
  
 0.625
SFP79196.1
Adenylosuccinate synthetase.
      0.494
Your Current Organism:
Ruminobacter amylophilus
NCBI taxonomy Id: 867
Other names: ATCC 29744, Bacteroides amylophilus, R. amylophilus, Ruminobacter amylophilum
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.