STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFP14540.1Ca-activated chloride channel family protein. (331 aa)    
Predicted Functional Partners:
SFP14593.1
Protein of unknown function DUF58.
 
  
 0.955
SFP14516.1
Tetratricopeptide repeat-containing protein.
 
   
 0.953
SFP14488.1
Oxygen tolerance.
 
   
 0.935
SFP14616.1
MoxR-like ATPase.
 
 
 0.915
SFP14570.1
Protein of unknown function.
       0.791
SFP21500.1
tRNA (mo5U34)-methyltransferase.
 
 
 0.675
SFP31650.1
S-adenosylmethionine-dependent methyltransferase.
   
 0.516
SFP44304.1
Methyltransferase domain-containing protein.
   
 0.516
SFP07904.1
Threonine dehydrogenase.
   
 
 0.496
SFP28619.1
MoxR-like ATPase.
 
 
 0.487
Your Current Organism:
Ruminobacter amylophilus
NCBI taxonomy Id: 867
Other names: ATCC 29744, Bacteroides amylophilus, R. amylophilus, Ruminobacter amylophilum
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.