STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFP19089.1Ribulose-phosphate 3-epimerase. (222 aa)    
Predicted Functional Partners:
SFP17311.1
Transketolase.
 0.996
SFP19119.1
Phosphoglycolate phosphatase.
 
  
 0.974
SFP07237.1
Ribose-5-phosphate isomerase.
  
 0.952
SFP04280.1
Arabinose-5-phosphate isomerase.
  
 
 0.934
SFP01711.1
Ribosome biogenesis GTPase.
 
    0.844
SFP19066.1
Sporulation related domain-containing protein.
     
 0.792
SFP19140.1
tryptophanyl-tRNA synthetase.
 
  
 0.775
SFP48934.1
Triosephosphate isomerase.
 
 
 0.763
SFP03996.1
Ribokinase.
  
 0.726
SFP24166.1
Ribose-phosphate pyrophosphokinase.
  
 
 0.701
Your Current Organism:
Ruminobacter amylophilus
NCBI taxonomy Id: 867
Other names: ATCC 29744, Bacteroides amylophilus, R. amylophilus, Ruminobacter amylophilum
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