STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFP29479.1Type VI secretion system protein ImpC. (496 aa)    
Predicted Functional Partners:
SFP29458.1
Type VI secretion system protein ImpB.
 0.999
SFP29505.1
Type VI secretion system secreted protein Hcp.
 
 0.984
SFP29439.1
Type VI secretion system protein ImpA.
 
 
 0.971
SFP29531.1
Type VI secretion system protein VasG.
 0.939
SFP29620.1
Type VI secretion system protein ImpH.
 
 
 0.931
SFP29795.1
ImcF-related N-terminal domain-containing protein.
 
 
 0.931
SFP29594.1
Type VI secretion protein, VC_A0110 family.
 
  
 0.930
SFP29744.1
Type VI secretion protein, VC_A0114 family.
 
 
 0.930
SFP29573.1
Gene 25-like lysozyme.
 
  
 0.913
SFP63881.1
ATP-dependent Clp protease ATP-binding subunit ClpB.
 
 0.787
Your Current Organism:
Ruminobacter amylophilus
NCBI taxonomy Id: 867
Other names: ATCC 29744, Bacteroides amylophilus, R. amylophilus, Ruminobacter amylophilum
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