STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFP34952.116S rRNA (cytidine1402-2'-O)-methyltransferase. (284 aa)    
Predicted Functional Partners:
SFO97909.1
3-methyl-2-oxobutanoate hydroxymethyltransferase.
 
      0.653
SFP34927.1
Outer membrane lipoprotein LpoA, binds and activates PBP1a.
       0.585
SFP34894.1
Phosphoheptose isomerase.
       0.566
SFP21393.1
tRNA(adenine34) deaminase.
      0.519
SFP35351.1
Cell division protein FtsZ.
  
   
 0.458
SFP15959.1
23S rRNA (uracil1939-C5)-methyltransferase.
  
  
 0.437
SFP26899.1
methionyl-tRNA synthetase.
  
  
 0.428
SFP11326.1
Small subunit ribosomal protein S14.
   
  
 0.419
SFP55153.1
Alanine racemase.
 
   0.419
SFP39654.1
SsrA-binding protein.
 
   
 0.403
Your Current Organism:
Ruminobacter amylophilus
NCBI taxonomy Id: 867
Other names: ATCC 29744, Bacteroides amylophilus, R. amylophilus, Ruminobacter amylophilum
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