STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFP35123.1UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase. (459 aa)    
Predicted Functional Partners:
SFP35097.1
UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase.
 
0.999
SFP29165.1
D-alanine-D-alanine ligase.
 
 0.998
SFP35153.1
Phospho-N-acetylmuramoyl-pentapeptide- transferase.
 
 0.998
SFP35235.1
UDP-N-acetylglucosamine-N- acetylmuramylpentapeptide N-acetylglucosamine transferase.
 
 
 0.988
SFP35264.1
UDP-N-acetylmuramate--L-alanine ligase.
 
 
 0.983
SFP35183.1
UDP-N-acetylmuramoylalanine--D-glutamate ligase.
 
 
0.976
SFP35210.1
Cell division protein FtsW.
 
 
 0.973
SFP55153.1
Alanine racemase.
  
 0.970
SFP35064.1
Cell division protein FtsI (penicillin-binding protein 3).
 
  
 0.963
SFP35293.1
Cell division protein FtsQ.
  
 
 0.927
Your Current Organism:
Ruminobacter amylophilus
NCBI taxonomy Id: 867
Other names: ATCC 29744, Bacteroides amylophilus, R. amylophilus, Ruminobacter amylophilum
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