STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFP39204.1Protein TonB. (257 aa)    
Predicted Functional Partners:
SFP39230.1
Biopolymer transport protein ExbD.
 
 
 0.979
SFP39318.1
Outer membrane receptor proteins, mostly Fe transport.
 
 
 0.975
SFP39251.1
Biopolymer transport protein ExbB.
 
 
 0.956
SFP46942.1
Vitamin B12 transporter.
 
 
 
 0.849
SFP26692.1
Biopolymer transport protein ExbD.
  
 
 0.803
SFP42149.1
Biopolymer transport protein TolR.
  
 
 0.803
SFP82516.1
Murein lipoprotein.
    
   0.790
SFP39186.1
Hypothetical protein.
       0.693
SFP67660.1
Methionine synthase (B12-dependent).
    
 0.680
SFP42175.1
Biopolymer transport protein TolQ.
  
 
 0.667
Your Current Organism:
Ruminobacter amylophilus
NCBI taxonomy Id: 867
Other names: ATCC 29744, Bacteroides amylophilus, R. amylophilus, Ruminobacter amylophilum
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.