STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFP46426.1Large subunit ribosomal protein L28. (78 aa)    
Predicted Functional Partners:
SFP46446.1
LSU ribosomal protein L33P.
 
 
 0.999
SFP00038.1
Large subunit ribosomal protein L21.
  
 
 0.997
SFP02153.1
SSU ribosomal protein S6P.
  
 
 0.997
SFP11829.1
SSU ribosomal protein S10P.
  
 
 0.997
SFP20185.1
Small subunit ribosomal protein S20.
  
 
 0.997
SFP31006.1
Large subunit ribosomal protein L32.
  
 
 0.997
SFP34797.1
Large subunit ribosomal protein L13.
  
 
 0.997
SFP35617.1
Small subunit ribosomal protein S16.
  
 
 0.997
SFP35701.1
Large subunit ribosomal protein L19.
  
 
 0.997
SFP41978.1
Small subunit ribosomal protein S15.
  
 
 0.997
Your Current Organism:
Ruminobacter amylophilus
NCBI taxonomy Id: 867
Other names: ATCC 29744, Bacteroides amylophilus, R. amylophilus, Ruminobacter amylophilum
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.