STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFP51739.1tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase. (248 aa)    
Predicted Functional Partners:
SFP11798.1
Large subunit ribosomal protein L3.
 
 
   0.756
SFO96027.1
Ribosome-associated protein.
  
 
 0.748
SFP00038.1
Large subunit ribosomal protein L21.
   
   0.735
SFP10936.1
Large subunit ribosomal protein L17.
   
   0.735
SFP11129.1
Large subunit ribosomal protein L15.
   
   0.725
SFP34797.1
Large subunit ribosomal protein L13.
   
   0.724
SFP75607.1
Large subunit ribosomal protein L11.
    
   0.721
SFP11422.1
Large subunit ribosomal protein L14.
   
   0.719
SFP11385.1
Large subunit ribosomal protein L24.
   
   0.718
SFP02108.1
23S rRNA (guanosine2251-2'-O)-methyltransferase.
   
 
 0.702
Your Current Organism:
Ruminobacter amylophilus
NCBI taxonomy Id: 867
Other names: ATCC 29744, Bacteroides amylophilus, R. amylophilus, Ruminobacter amylophilum
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